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Creators/Authors contains: "Liu, Zhipeng"

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  1. Medicago, a genus in the Leguminosae or Fabaceae family, includes the most globally significant forage crops, notably alfalfa (Medicago sativa). Its close diploid relative Medicago truncatula serves as an exemplary model plant for investigating legume growth and development, as well as symbiosis with rhizobia. Over the past decade, advances in Medicago genomics have significantly deepened our understanding of the molecular regulatory mechanisms that underlie various traits. In this review, we comprehensively summarize research progress on Medicago genomics, growth and development (including compound leaf development, shoot branching, flowering time regulation, inflorescence development, floral organ development, and seed dormancy), resistance to abiotic and biotic stresses, and symbiotic nitrogen fixation with rhizobia, as well as molecular breeding. We propose avenues for molecular biology research on Medicago in the coming decade, highlighting those areas that have yet to be investigated or that remain ambiguous. 
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    Free, publicly-accessible full text available February 1, 2026
  2. Lipoxygenase (LOX) is associated with responses to plant hormones, environmental stresses, and signaling substances. Methyl jasmonate (MeJA) treatment triggers the production of LOX, polyphenol oxidase, and protease inhibitors in various plants, producing resistance to herbivory. To examine the response of MtLOX24 to MeJA, the phenotypic and physiological changes in Medicago truncatula MtLOX24 overexpression and lox mutant plants were investigated. Additionally, wild-type R108, the MtLOX24-overexpressing line L4, and the mutant lox-1 were utilized as experimental materials to characterize the differentially expressed genes (DEGs) and metabolic pathways in response to MeJA. The results indicate that after treatment with 200 µM of MeJA, the damage in the mutants lox-1 and lox-2 was more serious than in the overexpressing lines L4 and L6, with more significant leaf wilting, yellowing, and oxidative damage in lox-1 and lox-2. Exogenous application of MeJA induced H2O2 production and POD activity but reduced CAT activity in the lox mutants. Transcriptome analysis revealed 10,238 DEGs in six libraries of normal-growing groups (cR108, cL4, and clox1) and MeJA-treated groups (R108, L4, and lox1). GO and KEGG functional enrichment analysis demonstrated that under normal growth conditions, the DEGs between the cL4 vs. cR108 and the clox-1 vs. cR108 groups were primarily enriched in signaling pathways such as plant–pathogen interactions, flavonoid biosynthesis, plant hormone signal transduction, the MAPK signaling pathway, and glutathione metabolism. The DEGs of the R108 vs. cR108 and L4 vs. cL4 groups after MeJA treatment were mainly enriched in glutathione metabolism, phenylpropanoid biosynthesis, the MAPK signaling pathway, circadian rhythm, and α-linolenic acid metabolism. Among them, under normal growth conditions, genes like PTI5, PR1, HSPs, PALs, CAD, CCoAOMT, and CYPs showed significant differences between L4 and the wild type, suggesting that the expression of these genes is impacted by MtLOX24 overexpression. CDPKs, CaMCMLs, IFS, JAZ, and other genes were also significantly different between L4 and the wild type upon MeJA treatment, suggesting that they might be important genes involved in JA signaling. This study provides a reference for the study of the response mechanism of MtLOX24 under MeJA signaling. 
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  3. Recycling underutilized resources from food waste (FW) to agriculture through hydrothermal carbonization (HTC) has been proposed to promote a circular economy (CE) in food-energy-water (FEW) nexus. However, most HTC studies on FW were conducted at laboratory scale, and little is known on the efficacy and feasibility of field application of HTC products from FW, i.e. the aqueous phrase (AP) and solid hydrochar (HC), to support agriculture production. An integrated pilot-scale HTC system was established to investigate practical HTC reaction conditions treating FW. A peak temperature of 180 ◦C at a residence time of 60 min with 3 times AP recirculation were recommended as optimal HTC conditions to achieve efficient recovery of nutrients, and desirable AP and HC properties for agriculture application. Dilution of the raw AP and composting of the fresh HC are necessary as post-treatments to eliminate potential phytotoxicity. Applying properly diluted AP and the composted HC significantly improved plant growth and nutrient availability in both greenhouse and field trials, which were comparable to commercial chemical fertilizer and soil amendment. The HTC of FW followed with agricultural application of the products yielded net negative carbon emission of 􀀀 0.28 t CO2e t􀀀 1, which was much lower than the other alternatives of FW treatments. Economic profit could be potentially achieved by valorization of the AP as liquid fertilizer and HC as soil amendment. Our study provides solid evidences demonstrating the technical and economic feasibility of recycling FW to agriculture through HTC as a promising CE strategy to sustain the FEW nexus. 
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    Software-Defined Networking (SDN) represents a major transition from traditional hardware-based networks to programmable software-based networks. While SDN brings visibility, elasticity, flexibility, and scalability, it also presents security challenges. This paper describes some of the hands-on labs we developed for teaching SDN security using the CloudLab platform. The hands-on labs have been used in a graduate level course on SDN/NFV related technologies. Our teaching experience of the hands-on labs is discussed. The hands-on labs can be adopted by other instructors to teach SDN security. 
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